Thursday, April 7, 2022

Possible CSD method? https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009601
Probably too few wires in our case.
Anyway, code is here https://github.com/natalieklein/gpcsd/blob/main/neuropixels/fit_gpcsd2d.py

https://deeplearning.neuromatch.io/projects/docs/datasets_and_models.html

Plan for today

https://pypi.org/project/pip-conflict-checker/
Better here https://github.com/naiquevin/pipdeptree

Thought on SIMURAN - everything is going towards notebooks and examples - how to be useful in this space??
https://allensdk.readthedocs.io/en/latest/_static/examples/nb/ecephys_quality_metrics.html

Allen visual behaviour multiscope has 4 depths in VISp and 4 depths in VISl, so perfect!
Along with this there is a task.