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Friday, July, 2022#

Plan#

Make some headway on the analysis coding and continue writing for thesis.
Consider how to address the reviews for my recent paper.

Achieved#

  • Fixed the bursting problem with the units not matching up properly.
  • Fixed spike LFP not picking up the correct spiking information.

TODO#

  • Head direction is not currently available for the .pos data in burst_analysis. Options for including this are to write a head direction calculator, or to pass over the already existing .txt files into OSF.
  • Do I want the spatial/non-spatial classification too? Maybe. Maybe also good to relate that to the spatial map (so exclude HD).
  • Still some leftover from yesterday.
  • Have burst plot but it needs some work before going into the thesis (also remove HD for checking)
  • Cannot read data from file results\processed\CSubRet1--CSubRet1_recording--small sq_habituation--16082017--16082017_CSubRet1_smallsq_1.nwb in mode 'r'. There are no values.
  • Check this and plot_spike_lfp.log to resolve.
  • Review the bayes.py function and the output to do the stats for non-spatial and present the non-spatial in thesis (plus maybe a barnard).
  • Fix compilation of latex doc

NOTE#

  • The ATNx sub results are stored in the same directory as the data is currently.