Neuroscience resources#
See my website also.
Journals#
Websites#
- The simon's foundation flatiron institute statistical and AI data analysis and machine learning school.
- Connected papers
Software#
- Elephant - analysis with the Neo format
- FOOOF - signal analysis
- Ghostipy - signal analysis
- NWB - standardised format
- RasterMap - high dim reduction
- DeepLabCut - DL based behavior recognition
- INCF standards - Stanardised tools and formats for many situations.
- MNE
- NWB-viewer
- Nwb widgets
- spikeinterface
- brainrender
- CaImAN
- Spectral connectivity
- Neural decoding
- neuralflow
- LFADS
General python tools#
- Numpy (and other Numfocus suported tools)
- Scipy
- Xarray
- Pandas
- statsmodels
- Scikit-learn
- stumpy
- tqdm
- typer
- seaborn
- plotly
- matplotlib
- pytest
- Sphinx
- awkward-array
- dtale
Workflow management#
- Snakemake
- mambaforge
- docker
- sumatra
- gitpython
- doit
Code management#
- Snyk
- Black
- Flake8
- read the docs
- Travis CI
- sonarcloud quality
- codecov.io
- codeclimate maintainability
- licensing